Autodock Tools (ADT)

For docking small molecules I use either Autodock 4 or Autodock Vina. Preparing files for docking with either of them can be done via PyMol (using this fabulous script) I usually prefer to use ADT (Autodock Tools).

I prefer to go that route just because I know it works, I have a lot of practice doing it that way and I haven't the time to prepare some docking files using both protocols to compare the reproducibility and results.

So, using ADT I always forget how to modify a few display options, such as centering or depth cue. Thus, I'll store here a screenshot form the manual:

Reset view is very useful but the one that I always forget is C, center.